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TMTC4 transmembrane O-mannosyltransferase targeting cadherins 4 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101373566, updated on 8-Mar-2024

Summary

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Gene symbol
TMTC4
Gene description
transmembrane O-mannosyltransferase targeting cadherins 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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See TMTC4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450493.1 (1847119..1911249)

NW_004450493.1Genomic Context describing neighboring genes Neighboring gene integrin subunit beta like 1 Neighboring gene sodium leak channel, non-selective Neighboring gene heterogeneous nuclear ribonucleoprotein D-like pseudogene Neighboring gene uncharacterized LOC105757648 Neighboring gene gamma-glutamylamine cyclotransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450493.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 4
Names
transmembrane and tetratricopeptide repeat containing 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450493.1 Reference Oros_1.0 Primary Assembly

    Range
    1847119..1911249
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004404926.2 → XP_004404983.1  transmembrane and TPR repeat-containing protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A2U3W9J5
    Conserved Domains (7) summary
    smart00028
    Location:583 → 616
    TPR; Tetratricopeptide repeats
    COG0457
    Location:449 → 712
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:517 → 543
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:549 → 582
    TPR_1; Tetratricopeptide repeat
    pfam07719
    Location:481 → 514
    TPR_2; Tetratricopeptide repeat
    pfam08409
    Location:291 → 365
    DUF1736; Domain of unknown function (DUF1736)
    pfam13431
    Location:503 → 536
    TPR_17; Tetratricopeptide repeat

  2. XM_004404927.2 → XP_004404984.1  transmembrane and TPR repeat-containing protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A2U3W9J9
    Conserved Domains (7) summary
    smart00028
    Location:472 → 505
    TPR; Tetratricopeptide repeats
    sd00006
    Location:406 → 432
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:438 → 471
    TPR_1; Tetratricopeptide repeat
    pfam07719
    Location:370 → 403
    TPR_2; Tetratricopeptide repeat
    pfam08409
    Location:180 → 254
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:369 → 435
    TPR_11; TPR repeat
    pfam13431
    Location:392 → 425
    TPR_17; Tetratricopeptide repeat
Nucleotide Protein
Heading Accession and Version

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