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GANAB glucosidase II alpha subunit [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101373409, updated on 8-Mar-2024

Summary

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Gene symbol
GANAB
Gene description
glucosidase II alpha subunit
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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See GANAB in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004451047.1 (205479..221433, complement)

NW_004451047.1Genomic Context describing neighboring genes Neighboring gene retinal outer segment membrane protein 1 Neighboring gene beta-1,3-glucuronyltransferase 3 Neighboring gene integrator complex subunit 5 Neighboring gene LBH domain containing 1 Neighboring gene citrate synthase lysine methyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004451047.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glucan 1,3-alpha-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of glucosidase II complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neutral alpha-glucosidase AB

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004451047.1 Reference Oros_1.0 Primary Assembly

    Range
    205479..221433 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004413765.2 → XP_004413822.1  neutral alpha-glucosidase AB isoform X4

    UniProtKB/TrEMBL
    A0A2U3WWC8
    Conserved Domains (3) summary
    cd06603
    Location:287 → 754
    GH31_GANC_GANAB_alpha; neutral alpha-glucosidase C, neutral alpha-glucosidase AB
    cd14752
    Location:145 → 287
    GH31_N; N-terminal domain of glycosyl hydrolase family 31 (GH31)
    pfam01055
    Location:268 → 713
    Glyco_hydro_31; Glycosyl hydrolases family 31

  2. XM_004413766.2 → XP_004413823.1  neutral alpha-glucosidase AB isoform X5

    UniProtKB/TrEMBL
    A0A2U3WWA4
    Conserved Domains (3) summary
    cd06603
    Location:270 → 737
    GH31_GANC_GANAB_alpha; neutral alpha-glucosidase C, neutral alpha-glucosidase AB
    cd14752
    Location:128 → 270
    GH31_N; N-terminal domain of glycosyl hydrolase family 31 (GH31)
    pfam01055
    Location:251 → 696
    Glyco_hydro_31; Glycosyl hydrolases family 31

  3. XM_004413764.2 → XP_004413821.1  neutral alpha-glucosidase AB isoform X3

    UniProtKB/TrEMBL
    A0A2U3WWB6
    Conserved Domains (3) summary
    cd06603
    Location:292 → 759
    GH31_GANC_GANAB_alpha; neutral alpha-glucosidase C, neutral alpha-glucosidase AB
    cd14752
    Location:150 → 292
    GH31_N; N-terminal domain of glycosyl hydrolase family 31 (GH31)
    pfam01055
    Location:273 → 718
    Glyco_hydro_31; Glycosyl hydrolases family 31

  4. XM_004413763.2 → XP_004413820.1  neutral alpha-glucosidase AB isoform X2

    UniProtKB/TrEMBL
    A0A2U3WWL8
    Conserved Domains (3) summary
    cd06603
    Location:384 → 851
    GH31_GANC_GANAB_alpha; neutral alpha-glucosidase C, neutral alpha-glucosidase AB
    cd14752
    Location:242 → 384
    GH31_N; N-terminal domain of glycosyl hydrolase family 31 (GH31)
    pfam01055
    Location:365 → 810
    Glyco_hydro_31; Glycosyl hydrolases family 31

  5. XM_004413762.2 → XP_004413819.1  neutral alpha-glucosidase AB isoform X1

    UniProtKB/TrEMBL
    A0A2U3WWA1
    Conserved Domains (3) summary
    cd06603
    Location:406 → 873
    GH31_GANC_GANAB_alpha; neutral alpha-glucosidase C, neutral alpha-glucosidase AB
    cd14752
    Location:264 → 406
    GH31_N; N-terminal domain of glycosyl hydrolase family 31 (GH31)
    pfam01055
    Location:387 → 832
    Glyco_hydro_31; Glycosyl hydrolases family 31
Nucleotide Protein
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