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CNTN3 contactin 3 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101371816, updated on 8-Mar-2024

Summary

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Gene symbol
CNTN3
Gene description
contactin 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450689.1 (1275526..1517994)

NW_004450689.1Genomic Context describing neighboring genes Neighboring gene small ubiquitin-related modifier 1 pseudogene Neighboring gene phosphoglycerate kinase 1-like Neighboring gene L-lactate dehydrogenase A chain pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450689.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450689.1 Reference Oros_1.0 Primary Assembly

    Range
    1275526..1517994
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004409343.2 → XP_004409400.1  contactin-3 isoform X1

    UniProtKB/TrEMBL
    A0A2U3WKN7
    Conserved Domains (4) summary
    smart00410
    Location:506 → 594
    IG_like; Immunoglobulin like
    cd00063
    Location:598 → 695
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:318 → 403
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:227 → 315
    Ig; Immunoglobulin domain

  2. XM_012565549.1 → XP_012421003.1  contactin-3 isoform X2

    Conserved Domains (4) summary
    smart00410
    Location:434 → 522
    IG_like; Immunoglobulin like
    cd00063
    Location:526 → 623
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:246 → 331
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:155 → 243
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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