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PTGS1 prostaglandin-endoperoxide synthase 1 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101370362, updated on 8-Mar-2024

Summary

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Gene symbol
PTGS1
Gene description
prostaglandin-endoperoxide synthase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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See PTGS1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450828.1 (1899802..1921182)

NW_004450828.1Genomic Context describing neighboring genes Neighboring gene LIM homeobox 6 Neighboring gene RNA binding motif protein 18 Neighboring gene mitochondrial ribosome recycling factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450828.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peroxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables prostaglandin-endoperoxide synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cyclooxygenase pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to oxidative stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prostaglandin G/H synthase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450828.1 Reference Oros_1.0 Primary Assembly

    Range
    1899802..1921182
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004411576.2 → XP_004411633.1  prostaglandin G/H synthase 1 isoform X4

    UniProtKB/TrEMBL
    A0A2U3WQX4
    Conserved Domains (1) summary
    cd09816
    Location:2 → 466
    prostaglandin_endoperoxide_synthase; Animal prostaglandin endoperoxide synthase and related bacterial proteins

  2. XM_004411574.2 → XP_004411631.1  prostaglandin G/H synthase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2U3WQY0
    Conserved Domains (2) summary
    cd09816
    Location:122 → 608
    prostaglandin_endoperoxide_synthase; Animal prostaglandin endoperoxide synthase and related bacterial proteins
    cd00054
    Location:65 → 102
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

  3. XM_004411575.2 → XP_004411632.1  prostaglandin G/H synthase 1 isoform X3

    UniProtKB/TrEMBL
    A0A2U3WQX3
    Conserved Domains (2) summary
    cd09816
    Location:91 → 577
    prostaglandin_endoperoxide_synthase; Animal prostaglandin endoperoxide synthase and related bacterial proteins
    cd00054
    Location:34 → 71
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

  4. XM_012566293.1 → XP_012421747.1  prostaglandin G/H synthase 1 isoform X2

    Conserved Domains (2) summary
    cd09816
    Location:110 → 596
    prostaglandin_endoperoxide_synthase; Animal prostaglandin endoperoxide synthase and related bacterial proteins
    cd00054
    Location:54 → 90
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

  5. XM_004411577.2 → XP_004411634.1  prostaglandin G/H synthase 1 isoform X5

    UniProtKB/TrEMBL
    A0A2U3WQW6
    Conserved Domains (1) summary
    cd09816
    Location:2 → 429
    prostaglandin_endoperoxide_synthase; Animal prostaglandin endoperoxide synthase and related bacterial proteins

  6. XM_012566294.1 → XP_012421748.1  prostaglandin G/H synthase 1 isoform X6

    Conserved Domains (1) summary
    cd09816
    Location:12 → 418
    prostaglandin_endoperoxide_synthase; Animal prostaglandin endoperoxide synthase and related bacterial proteins
Nucleotide Protein
Heading Accession and Version

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