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MDGA1 MAM domain containing glycosylphosphatidylinositol anchor 1 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101370245, updated on 8-Mar-2024

Summary

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Gene symbol
MDGA1
Gene description
MAM domain containing glycosylphosphatidylinositol anchor 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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See MDGA1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450720.1 (640126..694745)

NW_004450720.1Genomic Context describing neighboring genes Neighboring gene BTB domain containing 9 Neighboring gene zinc finger AN1-type containing 3 Neighboring gene 60S ribosomal protein L35a pseudogene Neighboring gene cytochrome c oxidase subunit 6A1, mitochondrial pseudogene Neighboring gene coiled-coil domain containing 167 Neighboring gene cap methyltransferase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450720.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables axon guidance receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuronal cell body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
MAM domain-containing glycosylphosphatidylinositol anchor protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450720.1 Reference Oros_1.0 Primary Assembly

    Range
    640126..694745
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004409771.1 → XP_004409828.1  MAM domain-containing glycosylphosphatidylinositol anchor protein 1

    UniProtKB/TrEMBL
    A0A2U3WLP9
    Conserved Domains (6) summary
    cd06263
    Location:753 → 916
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    cd00096
    Location:153 → 217
    Ig; Immunoglobulin domain
    smart00408
    Location:254 → 315
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:248 → 326
    IG_like; Immunoglobulin like
    pfam00629
    Location:753 → 917
    MAM; MAM domain, meprin/A5/mu
    cl11960
    Location:459 → 515
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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