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SLC35F5 solute carrier family 35 member F5 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101367393, updated on 8-Mar-2024

Summary

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Gene symbol
SLC35F5
Gene description
solute carrier family 35 member F5
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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See SLC35F5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450801.1 (290004..388375, complement)

NW_004450801.1Genomic Context describing neighboring genes Neighboring gene SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 pseudogene Neighboring gene LY6/PLAUR domain containing 1 Neighboring gene G protein-coupled receptor 39 Neighboring gene cytochrome c oxidase subunit 6B1-like Neighboring gene actin related protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450801.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of peptide transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
solute carrier family 35 member F5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450801.1 Reference Oros_1.0 Primary Assembly

    Range
    290004..388375 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004411221.1 → XP_004411278.1  solute carrier family 35 member F5 isoform X1

    UniProtKB/TrEMBL
    A0A2U3WQ11
    Conserved Domains (2) summary
    COG0697
    Location:243 → 471
    RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]
    pfam00892
    Location:328 → 471
    EamA; EamA-like transporter family

  2. XM_012566188.1 → XP_012421642.1  solute carrier family 35 member F5 isoform X2

    Conserved Domains (3) summary
    COG0697
    Location:200 → 425
    RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]
    pfam00892
    Location:282 → 425
    EamA; EamA-like transporter family
    cl23754
    Location:183 → 271
    EamA; EamA-like transporter family
Nucleotide Protein
Heading Accession and Version

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