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NDST2 N-deacetylase and N-sulfotransferase 2 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101367273, updated on 8-Mar-2024

Summary

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Gene symbol
NDST2
Gene description
N-deacetylase and N-sulfotransferase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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See NDST2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450583.1 (784186..789896, complement)

NW_004450583.1Genomic Context describing neighboring genes Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 1 Neighboring gene zinc finger SWIM-type containing 8 Neighboring gene calcium/calmodulin dependent protein kinase II gamma Neighboring gene plasminogen activator, urokinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450583.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2
Names
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450583.1 Reference Oros_1.0 Primary Assembly

    Range
    784186..789896 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012564726.1 → XP_012420180.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2 isoform X2

    Conserved Domains (2) summary
    pfam12062
    Location:1 → 484
    HSNSD; heparan sulfate-N-deacetylase
    cl21551
    Location:573 → 765
    Sulfotransfer_1; Sulfotransferase domain

  2. XM_004407024.2 → XP_004407081.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A2U3WEQ7
    Conserved Domains (2) summary
    pfam00685
    Location:603 → 852
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:25 → 514
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
Heading Accession and Version

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