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FUCA1 alpha-L-fucosidase 1 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101365465, updated on 8-Mar-2024

Summary

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Gene symbol
FUCA1
Gene description
alpha-L-fucosidase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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See FUCA1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450297.1 (4876005..4888387)

NW_004450297.1Genomic Context describing neighboring genes Neighboring gene proline rich nuclear receptor coactivator 2 Neighboring gene cannabinoid receptor 2 Neighboring gene 3-hydroxy-3-methylglutaryl-CoA lyase Neighboring gene UDP-galactose-4-epimerase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450297.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-L-fucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fucose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycoside catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tissue alpha-L-fucosidase
Names
fucosidase, alpha-L- 1, tissue

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450297.1 Reference Oros_1.0 Primary Assembly

    Range
    4876005..4888387
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004394757.2 → XP_004394814.1  tissue alpha-L-fucosidase

    UniProtKB/TrEMBL
    A0A2U3VIW9
    Conserved Domains (3) summary
    smart00812
    Location:33 → 415
    Alpha_L_fucos; Alpha-L-fucosidase
    COG3669
    Location:65 → 395
    AfuC; Alpha-L-fucosidase [Carbohydrate transport and metabolism]
    pfam16757
    Location:380 → 465
    Fucosidase_C; Alpha-L-fucosidase C-terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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