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GAD1 glutamate decarboxylase 1 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101365318, updated on 8-Mar-2024

Summary

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Gene symbol
GAD1
Gene description
glutamate decarboxylase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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See GAD1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450608.1 (2373639..2414822, complement)

NW_004450608.1Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor-like protein 6-interacting protein 6 pseudogene Neighboring gene U1 small nuclear ribonucleoprotein C pseudogene Neighboring gene glutamate rich 2 Neighboring gene Sp5 transcription factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450608.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glutamate decarboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gamma-aminobutyric acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynaptic active zone IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glutamate decarboxylase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450608.1 Reference Oros_1.0 Primary Assembly

    Range
    2373639..2414822 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004407667.2 → XP_004407724.1  glutamate decarboxylase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2U3WG95
    Conserved Domains (1) summary
    pfam00282
    Location:144 → 518
    Pyridoxal_deC; Pyridoxal-dependent decarboxylase conserved domain

  2. XM_004407668.1 → XP_004407725.1  glutamate decarboxylase 1 isoform X2

    See identical proteins and their annotated locations for XP_004407725.1

    UniProtKB/TrEMBL
    A0A2U3WGA6
    Conserved Domains (1) summary
    cl18945
    Location:144 → 213
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
Nucleotide Protein
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