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ATRN attractin [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101364872, updated on 8-Mar-2024

Summary

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Gene symbol
ATRN
Gene description
attractin
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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See ATRN in Genome Data Viewer
Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450346.1 (1444564..1599001)

NW_004450346.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 4 member 11 Neighboring gene dynein axonemal assembly factor 9 Neighboring gene phosphatidylethanolamine-binding protein 1 pseudogene Neighboring gene GDNF family receptor alpha 4 Neighboring gene ADAM metallopeptidase domain 33

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450346.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
attractin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450346.1 Reference Oros_1.0 Primary Assembly

    Range
    1444564..1599001
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004398179.2 → XP_004398236.1  attractin

    UniProtKB/TrEMBL
    A0A2U3VSR8
    Conserved Domains (8) summary
    smart00423
    Location:638 → 684
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd00041
    Location:123 → 238
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:1053 → 1098
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:492 → 541
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:923 → 974
    PSI; Plexin repeat
    pfam13415
    Location:341 → 390
    Kelch_3; Galactose oxidase, central domain
    pfam13854
    Location:381 → 419
    Kelch_5; Kelch motif
    cl02432
    Location:779 → 911
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
Nucleotide Protein
Heading Accession and Version

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