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PLCD1 phospholipase C delta 1 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101364446, updated on 8-Mar-2024

Summary

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Gene symbol
PLCD1
Gene description
phospholipase C delta 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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See PLCD1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450895.1 (805212..828059)

NW_004450895.1Genomic Context describing neighboring genes Neighboring gene acetyl-CoA acyltransferase 1 Neighboring gene MYD88 innate immune signal transduction adaptor Neighboring gene DLEC1 cilia and flagella associated protein Neighboring gene villin like Neighboring gene CTD small phosphatase like Neighboring gene non-histone chromosomal protein HMG-14 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450895.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol phospholipase C activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450895.1 Reference Oros_1.0 Primary Assembly

    Range
    805212..828059
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004412317.2 → XP_004412374.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1 isoform X3

    UniProtKB/TrEMBL
    A0A2U3WSP1
    Conserved Domains (7) summary
    cd00275
    Location:629 → 755
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08593
    Location:295 → 596
    PI-PLCc_delta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta
    PLN02228
    Location:212 → 755
    PLN02228; Phosphoinositide phospholipase C
    cd13363
    Location:22 → 139
    PH_PLC_delta; Phospholipase C-delta (PLC-delta) pleckstrin homology (PH) domain
    pfam00169
    Location:30 → 130
    PH; PH domain
    pfam09279
    Location:213 → 295
    EF-hand_like; Phosphoinositide-specific phospholipase C, efhand-like
    pfam14788
    Location:159 → 208
    EF-hand_10; EF hand

  2. XM_004412316.2 → XP_004412373.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1 isoform X2

    UniProtKB/TrEMBL
    A0A2U3WSP9
    Conserved Domains (7) summary
    cd00275
    Location:650 → 776
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08593
    Location:316 → 617
    PI-PLCc_delta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta
    PLN02228
    Location:233 → 776
    PLN02228; Phosphoinositide phospholipase C
    cd13363
    Location:43 → 160
    PH_PLC_delta; Phospholipase C-delta (PLC-delta) pleckstrin homology (PH) domain
    pfam00169
    Location:51 → 151
    PH; PH domain
    pfam09279
    Location:234 → 316
    EF-hand_like; Phosphoinositide-specific phospholipase C, efhand-like
    pfam14788
    Location:180 → 229
    EF-hand_10; EF hand

  3. XM_012566606.1 → XP_012422060.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1 isoform X1

    Conserved Domains (7) summary
    cd00275
    Location:685 → 806
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08593
    Location:316 → 617
    PI-PLCc_delta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta
    PLN02228
    Location:233 → 806
    PLN02228; Phosphoinositide phospholipase C
    cd13363
    Location:43 → 160
    PH_PLC_delta; Phospholipase C-delta (PLC-delta) pleckstrin homology (PH) domain
    pfam00169
    Location:51 → 151
    PH; PH domain
    pfam09279
    Location:234 → 316
    EF-hand_like; Phosphoinositide-specific phospholipase C, efhand-like
    pfam14788
    Location:180 → 229
    EF-hand_10; EF hand
Nucleotide Protein
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