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GLDC glycine decarboxylase [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101362792, updated on 8-Mar-2024

Summary

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Gene symbol
GLDC
Gene description
glycine decarboxylase
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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See GLDC in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450281.1 (608681..700100)

NW_004450281.1Genomic Context describing neighboring genes Neighboring gene lysine demethylase 4C Neighboring gene 40S ribosomal protein SA pseudogene Neighboring gene 60S ribosomal protein L12 pseudogene Neighboring gene ubiquitin like with PHD and ring finger domains 2 Neighboring gene histo-blood group ABO system transferase 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450281.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycine dehydrogenase (decarboxylating) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycine decarboxylation via glycine cleavage system IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of glycine cleavage complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycine dehydrogenase (decarboxylating), mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450281.1 Reference Oros_1.0 Primary Assembly

    Range
    608681..700100
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004393522.2 → XP_004393579.1  glycine dehydrogenase (decarboxylating), mitochondrial

    UniProtKB/TrEMBL
    A0A2U3VFS8
    Conserved Domains (3) summary
    COG1003
    Location:504 → 977
    GcvP2; Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
    PRK05367
    Location:60 → 1009
    PRK05367; glycine dehydrogenase; Provisional
    pfam02347
    Location:65 → 488
    GDC-P; Glycine cleavage system P-protein
Nucleotide Protein
Heading Accession and Version

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