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CHST3 carbohydrate sulfotransferase 3 [ Trichechus manatus latirostris (Florida manatee) ]

Gene ID: 101359650, updated on 8-Mar-2024

Summary

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Gene symbol
CHST3
Gene description
carbohydrate sulfotransferase 3
See related
EnsemblRapid:ENSTMLG00000019758
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichechus manatus latirostris (sub-species: latirostris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Sirenia; Trichechidae; Trichechus
Orthologs
human mouse all
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Genomic context

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See CHST3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_01 current TriManLat1.0 (GCF_000243295.1) Unplaced Scaffold NW_004444042.1 (8510936..8561984, complement)

NW_004444042.1Genomic Context describing neighboring genes Neighboring gene anaphase promoting complex subunit 16 Neighboring gene activating signal cointegrator 1 complex subunit 1 Neighboring gene SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 Neighboring gene uncharacterized LOC111821797 Neighboring gene gem-associated protein 2 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004444042 Unplaced Scaffold Reference TriManLat1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chondroitin 6-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000243295.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TriManLat1.0 Primary Assembly

Genomic

  1. NW_004444042.1 Reference TriManLat1.0 Primary Assembly

    Range
    8510936..8561984 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023737706.1 → XP_023593474.1  carbohydrate sulfotransferase 3

    UniProtKB/TrEMBL
    A0A2Y9DZE4
    Conserved Domains (1) summary
    cl21551
    Location:261 → 445
    Sulfotransfer_3; Sulfotransferase family

  2. XM_004383254.2 → XP_004383311.1  carbohydrate sulfotransferase 3

    UniProtKB/TrEMBL
    A0A2Y9DZE4
    Related
    ENSTMLP00000027769.1, ENSTMLT00000029807.1
    Conserved Domains (1) summary
    cl21551
    Location:261 → 445
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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