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ERCC4 ERCC excision repair 4, endonuclease catalytic subunit [ Trichechus manatus latirostris (Florida manatee) ]

Gene ID: 101359440, updated on 8-Mar-2024

Summary

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Gene symbol
ERCC4
Gene description
ERCC excision repair 4, endonuclease catalytic subunit
See related
EnsemblRapid:ENSTMLG00000017611
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichechus manatus latirostris (sub-species: latirostris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Sirenia; Trichechidae; Trichechus
Orthologs
human mouse all
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Genomic context

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See ERCC4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_01 current TriManLat1.0 (GCF_000243295.1) Unplaced Scaffold NW_004443960.1 (13217730..13253166)

NW_004443960.1Genomic Context describing neighboring genes Neighboring gene calcineurin like phosphoesterase domain containing 1 Neighboring gene uncharacterized LOC111820010 Neighboring gene shisa family member 9 Neighboring gene myocardin related transcription factor B Neighboring gene transfer RNA threonine (anticodon CGU)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004443960 Unplaced Scaffold Reference TriManLat1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA endodeoxyribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair involved in interstrand cross-link repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in resolution of meiotic recombination intermediates IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleotide-excision repair factor 1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA repair endonuclease XPF
Names
excision repair cross-complementing rodent repair deficiency, complementation group 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000243295.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TriManLat1.0 Primary Assembly

Genomic

  1. NW_004443960.1 Reference TriManLat1.0 Primary Assembly

    Range
    13217730..13253166
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023728475.1 → XP_023584243.1  DNA repair endonuclease XPF isoform X3

    UniProtKB/TrEMBL
    A0A2Y9QXZ6
    Conserved Domains (1) summary
    cl27383
    Location:129 → 712
    ERCC4; ERCC4 domain

  2. XM_023728473.1 → XP_023584241.1  DNA repair endonuclease XPF isoform X2

    UniProtKB/TrEMBL
    A0A2Y9QS66
    Conserved Domains (1) summary
    cl27383
    Location:97 → 881
    ERCC4; ERCC4 domain

  3. XM_004373267.2 → XP_004373324.1  DNA repair endonuclease XPF isoform X1

    UniProtKB/TrEMBL
    A0A2Y9DFR3
    Related
    ENSTMLP00000024678.1, ENSTMLT00000026455.1
    Conserved Domains (2) summary
    TIGR00596
    Location:97 → 907
    rad1; DNA repair protein (rad1)
    pfam02732
    Location:686 → 816
    ERCC4; ERCC4 domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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