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LOC101357246 core histone macro-H2A.2 [ Trichechus manatus latirostris (Florida manatee) ]

Gene ID: 101357246, updated on 8-Mar-2024

Summary

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Gene symbol
LOC101357246
Gene description
core histone macro-H2A.2
See related
EnsemblRapid:ENSTMLG00000009677
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichechus manatus latirostris (sub-species: latirostris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Sirenia; Trichechidae; Trichechus
Orthologs
human mouse all
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Genomic context

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See LOC101357246 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_01 current TriManLat1.0 (GCF_000243295.1) Unplaced Scaffold NW_004444099.1 (482391..544497, complement)

NW_004444099.1Genomic Context describing neighboring genes Neighboring gene secretion associated Ras related GTPase 1A Neighboring gene trypsin like peroxisomal matrix peptidase 1 Neighboring gene AIF family member 2 Neighboring gene collagen type XIII alpha 1 chain Neighboring gene family with sequence similarity 241 member B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004444099 Unplaced Scaffold Reference TriManLat1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heterochromatin formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
core histone macro-H2A.2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000243295.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TriManLat1.0 Primary Assembly

Genomic

  1. NW_004444099.1 Reference TriManLat1.0 Primary Assembly

    Range
    482391..544497 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004386376.2 → XP_004386433.1  core histone macro-H2A.2

    UniProtKB/TrEMBL
    A0A2Y9E4U8
    Related
    ENSTMLP00000013493.1, ENSTMLT00000014480.1
    Conserved Domains (3) summary
    smart00414
    Location:14 → 119
    H2A; Histone 2A
    cd00074
    Location:5 → 117
    H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...
    cd02904
    Location:178 → 364
    Macro_H2A_like; Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose ...
Nucleotide Protein
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