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TMTC1 transmembrane O-mannosyltransferase targeting cadherins 1 [ Trichechus manatus latirostris (Florida manatee) ]

Gene ID: 101352651, updated on 8-Mar-2024

Summary

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Gene symbol
TMTC1
Gene description
transmembrane O-mannosyltransferase targeting cadherins 1
See related
EnsemblRapid:ENSTMLG00000019429
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichechus manatus latirostris (sub-species: latirostris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Sirenia; Trichechidae; Trichechus
Orthologs
human mouse all
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Genomic context

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See TMTC1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_01 current TriManLat1.0 (GCF_000243295.1) Unplaced Scaffold NW_004444048.1 (7641207..7983501, complement)

NW_004444048.1Genomic Context describing neighboring genes Neighboring gene ERGIC and golgi 2 Neighboring gene ovochymase 1 Neighboring gene mitochondrial import receptor subunit TOM5 homolog Neighboring gene importin 8 Neighboring gene caprin family member 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004444048 Unplaced Scaffold Reference TriManLat1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC1
Names
transmembrane and tetratricopeptide repeat containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000243295.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TriManLat1.0 Primary Assembly

Genomic

  1. NW_004444048.1 Reference TriManLat1.0 Primary Assembly

    Range
    7641207..7983501 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023738067.1 → XP_023593835.1  protein O-mannosyl-transferase TMTC1

    UniProtKB/TrEMBL
    A0A2Y9REW1
    Related
    ENSTMLP00000027680.1, ENSTMLT00000029711.1
    Conserved Domains (4) summary
    sd00006
    Location:493 → 521
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:203 → 276
    DUF1736; Domain of unknown function (DUF1736)
    cl23811
    Location:11 → 336
    Glucos_trans_II; Glucosyl transferase GtrII
    cl26002
    Location:380 → 786
    TPR_11; TPR repeat
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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