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CSGALNACT2 chondroitin sulfate N-acetylgalactosaminyltransferase 2 [ Trichechus manatus latirostris (Florida manatee) ]

Gene ID: 101352592, updated on 8-Mar-2024

Summary

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Gene symbol
CSGALNACT2
Gene description
chondroitin sulfate N-acetylgalactosaminyltransferase 2
See related
EnsemblRapid:ENSTMLG00000021240
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichechus manatus latirostris (sub-species: latirostris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Sirenia; Trichechidae; Trichechus
Orthologs
human mouse all
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Genomic context

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See CSGALNACT2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_01 current TriManLat1.0 (GCF_000243295.1) Unplaced Scaffold NW_004444201.1 (686668..781202)

NW_004444201.1Genomic Context describing neighboring genes Neighboring gene BMS1 ribosome biogenesis factor Neighboring gene ret proto-oncogene Neighboring gene RasGEF domain family member 1A Neighboring gene zinc finger protein 248

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004444201 Unplaced Scaffold Reference TriManLat1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate N-acetylgalactosaminyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000243295.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TriManLat1.0 Primary Assembly

Genomic

  1. NW_004444201.1 Reference TriManLat1.0 Primary Assembly

    Range
    686668..781202
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023724857.1 → XP_023580625.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9QBT6
    Conserved Domains (2) summary
    cl11394
    Location:140 → 516
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    cl25632
    Location:54 → 135
    type_I_hlyD; type I secretion membrane fusion protein, HlyD family

  2. XM_023724858.1 → XP_023580626.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A2Y9QGI0
    Conserved Domains (2) summary
    cl11394
    Location:140 → 387
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    cl25632
    Location:54 → 135
    type_I_hlyD; type I secretion membrane fusion protein, HlyD family

  3. XM_004389879.2 → XP_004389936.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9QBT6
    Related
    ENSTMLP00000029920.1, ENSTMLT00000032110.1
    Conserved Domains (2) summary
    cl11394
    Location:140 → 516
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    cl25632
    Location:54 → 135
    type_I_hlyD; type I secretion membrane fusion protein, HlyD family

  4. XM_023724859.1 → XP_023580627.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X3

    UniProtKB/TrEMBL
    A0A2Y9QG00
    Conserved Domains (1) summary
    cl11394
    Location:10 → 232
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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