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LOC101352400 N-deacetylase and N-sulfotransferase 4 [ Trichechus manatus latirostris (Florida manatee) ]

Gene ID: 101352400, updated on 31-Jan-2024

Summary

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Gene symbol
LOC101352400
Gene description
N-deacetylase and N-sulfotransferase 4
See related
EnsemblRapid:ENSTMLG00000013653
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichechus manatus latirostris (sub-species: latirostris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Sirenia; Trichechidae; Trichechus
Also known as
NDST4
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Genomic context

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See LOC101352400 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_01 current TriManLat1.0 (GCF_000243295.1) Unplaced Scaffold NW_004444086.1 (215638..709147)

NW_004444086.1Genomic Context describing neighboring genes Neighboring gene UDP glycosyltransferase 8 Neighboring gene uncharacterized LOC111822278

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004444086 Unplaced Scaffold Reference TriManLat1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4
Names
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000243295.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TriManLat1.0 Primary Assembly

Genomic

  1. NW_004444086.1 Reference TriManLat1.0 Primary Assembly

    Range
    215638..709147
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004385892.2 → XP_004385949.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4

    UniProtKB/TrEMBL
    A0A2Y9RQK5
    Conserved Domains (2) summary
    pfam00685
    Location:594 → 845
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:20 → 505
    HSNSD; heparan sulfate-N-deacetylase

  2. XM_023740189.1 → XP_023595957.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4

    UniProtKB/TrEMBL
    A0A2Y9RQK5
    Related
    ENSTMLP00000019155.1, ENSTMLT00000020533.1
    Conserved Domains (2) summary
    pfam00685
    Location:594 → 845
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:20 → 505
    HSNSD; heparan sulfate-N-deacetylase

  3. XM_023740187.1 → XP_023595955.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4

    UniProtKB/TrEMBL
    A0A2Y9RQK5
    Conserved Domains (2) summary
    pfam00685
    Location:594 → 845
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:20 → 505
    HSNSD; heparan sulfate-N-deacetylase

  4. XM_023740188.1 → XP_023595956.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4

    UniProtKB/TrEMBL
    A0A2Y9RQK5
    Conserved Domains (2) summary
    pfam00685
    Location:594 → 845
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:20 → 505
    HSNSD; heparan sulfate-N-deacetylase

  5. XM_023740186.1 → XP_023595954.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4

    UniProtKB/TrEMBL
    A0A2Y9RQK5
    Conserved Domains (2) summary
    pfam00685
    Location:594 → 845
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:20 → 505
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
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