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B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (Globoside blood group) [ Trichechus manatus latirostris (Florida manatee) ]

Gene ID: 101351705, updated on 8-Mar-2024

Summary

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Gene symbol
B3GALNT1
Gene description
beta-1,3-N-acetylgalactosaminyltransferase 1 (Globoside blood group)
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichechus manatus latirostris (sub-species: latirostris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Sirenia; Trichechidae; Trichechus
Orthologs
human mouse all
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Genomic context

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See B3GALNT1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_01 current TriManLat1.0 (GCF_000243295.1) Unplaced Scaffold NW_004444065.1 (819239..864919, complement)

NW_004444065.1Genomic Context describing neighboring genes Neighboring gene 14-3-3 protein epsilon pseudogene Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1L Neighboring gene uncharacterized LOC111822099 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004444065 Unplaced Scaffold Reference TriManLat1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000243295.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TriManLat1.0 Primary Assembly

Genomic

  1. NW_004444065.1 Reference TriManLat1.0 Primary Assembly

    Range
    819239..864919 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023739128.1 → XP_023594896.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A2Y9RSK4
    Conserved Domains (1) summary
    pfam01762
    Location:92 → 285
    Galactosyl_T; Galactosyltransferase

  2. XM_004384877.3 → XP_004384934.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A2Y9RSK4
    Conserved Domains (1) summary
    pfam01762
    Location:92 → 285
    Galactosyl_T; Galactosyltransferase

  3. XM_023739126.1 → XP_023594894.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A2Y9RSK4
    Conserved Domains (1) summary
    pfam01762
    Location:92 → 285
    Galactosyl_T; Galactosyltransferase

  4. XM_023739127.1 → XP_023594895.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A2Y9RSK4
    Conserved Domains (1) summary
    pfam01762
    Location:92 → 285
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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