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GGTA1 glycoprotein alpha-galactosyltransferase 1 (inactive) [ Trichechus manatus latirostris (Florida manatee) ]

Gene ID: 101350553, updated on 8-Mar-2024

Summary

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Gene symbol
GGTA1
Gene description
glycoprotein alpha-galactosyltransferase 1 (inactive)
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichechus manatus latirostris (sub-species: latirostris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Sirenia; Trichechidae; Trichechus
Orthologs
human mouse all
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Genomic context

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See GGTA1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_01 current TriManLat1.0 (GCF_000243295.1) Unplaced Scaffold NW_004443974.1 (5314220..5396566, complement)

NW_004443974.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein phosphatase 2A catalytic subunit beta isoform pseudogene Neighboring gene N-acetyllactosaminide alpha-1,3-galactosyltransferase-like Neighboring gene 60S ribosomal protein L37a-like Neighboring gene DAB2 interacting protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004443974 Unplaced Scaffold Reference TriManLat1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase
Names
N-acetyllactosaminide alpha-1,3-galactosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000243295.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TriManLat1.0 Primary Assembly

Genomic

  1. NW_004443974.1 Reference TriManLat1.0 Primary Assembly

    Range
    5314220..5396566 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004375620.2 → XP_004375677.1  inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase

    UniProtKB/TrEMBL
    A0A2Y9QWI2
    Conserved Domains (1) summary
    pfam03414
    Location:82 → 365
    Glyco_transf_6; Glycosyltransferase family 6

  2. XM_023730675.1 → XP_023586443.1  inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase

    UniProtKB/TrEMBL
    A0A2Y9QWI2
    Conserved Domains (1) summary
    pfam03414
    Location:82 → 365
    Glyco_transf_6; Glycosyltransferase family 6

  3. XM_023730674.1 → XP_023586442.1  inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase

    UniProtKB/TrEMBL
    A0A2Y9QWI2
    Conserved Domains (1) summary
    pfam03414
    Location:82 → 365
    Glyco_transf_6; Glycosyltransferase family 6

  4. XM_023730678.1 → XP_023586446.1  inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase

    UniProtKB/TrEMBL
    A0A2Y9QWI2
    Conserved Domains (1) summary
    pfam03414
    Location:82 → 365
    Glyco_transf_6; Glycosyltransferase family 6

  5. XM_023730676.1 → XP_023586444.1  inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase

    UniProtKB/TrEMBL
    A0A2Y9QWI2
    Conserved Domains (1) summary
    pfam03414
    Location:82 → 365
    Glyco_transf_6; Glycosyltransferase family 6

  6. XM_023730677.1 → XP_023586445.1  inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase

    UniProtKB/TrEMBL
    A0A2Y9QWI2
    Conserved Domains (1) summary
    pfam03414
    Location:82 → 365
    Glyco_transf_6; Glycosyltransferase family 6
Nucleotide Protein
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