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B4GALNT4 beta-1,4-N-acetyl-galactosaminyltransferase 4 [ Trichechus manatus latirostris (Florida manatee) ]

Gene ID: 101350259, updated on 8-Mar-2024

Summary

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Gene symbol
B4GALNT4
Gene description
beta-1,4-N-acetyl-galactosaminyltransferase 4
See related
EnsemblRapid:ENSTMLG00000015009
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichechus manatus latirostris (sub-species: latirostris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Sirenia; Trichechidae; Trichechus
Orthologs
human mouse all
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Genomic context

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See B4GALNT4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_01 current TriManLat1.0 (GCF_000243295.1) Unplaced Scaffold NW_004444180.1 (388172..400723)

NW_004444180.1Genomic Context describing neighboring genes Neighboring gene interferon-induced transmembrane protein 1-like Neighboring gene interferon-induced transmembrane protein 1 Neighboring gene plakophilin 3 Neighboring gene single Ig and TIR domain containing Neighboring gene phosphatidylserine synthase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004444180 Unplaced Scaffold Reference TriManLat1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000243295.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TriManLat1.0 Primary Assembly

Genomic

  1. NW_004444180.1 Reference TriManLat1.0 Primary Assembly

    Range
    388172..400723
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004389402.2 → XP_004389459.2  N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A2Y9E8Y5
    Related
    ENSTMLT00000022579.1
    Conserved Domains (2) summary
    cl08459
    Location:163 → 284
    PA14; PA14 domain
    cl11394
    Location:724 → 1036
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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