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CHST4 carbohydrate sulfotransferase 4 [ Trichechus manatus latirostris (Florida manatee) ]

Gene ID: 101350100, updated on 8-Mar-2024

Summary

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Gene symbol
CHST4
Gene description
carbohydrate sulfotransferase 4
See related
EnsemblRapid:ENSTMLG00000009368
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichechus manatus latirostris (sub-species: latirostris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Sirenia; Trichechidae; Trichechus
Orthologs
human mouse all
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Genomic context

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See CHST4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_01 current TriManLat1.0 (GCF_000243295.1) Unplaced Scaffold NW_004444130.1 (1147676..1209062, complement)

NW_004444130.1Genomic Context describing neighboring genes Neighboring gene MARVEL domain containing 3 Neighboring gene tyrosine aminotransferase Neighboring gene zinc finger protein 19 Neighboring gene zinc finger protein 23

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004444130 Unplaced Scaffold Reference TriManLat1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in keratan sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein sulfation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000243295.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TriManLat1.0 Primary Assembly

Genomic

  1. NW_004444130.1 Reference TriManLat1.0 Primary Assembly

    Range
    1147676..1209062 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023741886.1 → XP_023597654.1  carbohydrate sulfotransferase 4

    UniProtKB/TrEMBL
    A0A2Y9S017
    Conserved Domains (1) summary
    pfam13469
    Location:45 → 300
    Sulfotransfer_3; Sulfotransferase family

  2. XM_004387834.2 → XP_004387891.1  carbohydrate sulfotransferase 4

    UniProtKB/TrEMBL
    A0A2Y9S017
    Related
    ENSTMLP00000012993.1, ENSTMLT00000013961.1
    Conserved Domains (1) summary
    pfam13469
    Location:45 → 300
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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