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SGCD sarcoglycan delta [ Trichechus manatus latirostris (Florida manatee) ]

Gene ID: 101349002, updated on 8-Mar-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichechus manatus latirostris (sub-species: latirostris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Sirenia; Trichechidae; Trichechus
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_01 current TriManLat1.0 (GCF_000243295.1) Unplaced Scaffold NW_004443947.1 (25969785..26266472, complement)

NW_004443947.1Genomic Context describing neighboring genes Neighboring gene L-amino-acid oxidase-like Neighboring gene T cell immunoglobulin and mucin domain containing 4 Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene U6atac minor spliceosomal RNA Neighboring gene uncharacterized LOC111819533

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004443947 Unplaced Scaffold Reference TriManLat1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000243295.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TriManLat1.0 Primary Assembly

Genomic

  1. NW_004443947.1 Reference TriManLat1.0 Primary Assembly

    Range
    25969785..26266472 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023726426.1 → XP_023582194.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    A0A2Y9QS62
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 165
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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