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SLC11A1 solute carrier family 11 member 1 [ Trichechus manatus latirostris (Florida manatee) ]

Gene ID: 101344464, updated on 8-Mar-2024

Summary

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Gene symbol
SLC11A1
Gene description
solute carrier family 11 member 1
See related
EnsemblRapid:ENSTMLG00000009764
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichechus manatus latirostris (sub-species: latirostris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Sirenia; Trichechidae; Trichechus
Orthologs
human mouse all
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Genomic context

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See SLC11A1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_01 current TriManLat1.0 (GCF_000243295.1) Unplaced Scaffold NW_004443977.1 (9485137..9496367)

NW_004443977.1Genomic Context describing neighboring genes Neighboring gene PNKD metallo-beta-lactamase domain containing Neighboring gene 40S ribosomal protein S11-like Neighboring gene ciliogenesis associated TTC17 interacting protein Neighboring gene CTD small phosphatase 1 Neighboring gene villin 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004443977 Unplaced Scaffold Reference TriManLat1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadmium ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables manganese ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal cation:proton antiporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular iron ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in metal ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to lipopolysaccharide IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in phagocytic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
natural resistance-associated macrophage protein 1
Names
solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000243295.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TriManLat1.0 Primary Assembly

Genomic

  1. NW_004443977.1 Reference TriManLat1.0 Primary Assembly

    Range
    9485137..9496367
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004376312.2 → XP_004376369.2  natural resistance-associated macrophage protein 1

    UniProtKB/TrEMBL
    A0A2Y9DKS2
    Related
    ENSTMLP00000013627.1, ENSTMLT00000014626.1
    Conserved Domains (1) summary
    TIGR01197
    Location:80 → 480
    nramp; NRAMP (natural resistance-associated macrophage protein) metal ion transporters

RNA

  1. XR_002824086.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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