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GALNT6 polypeptide N-acetylgalactosaminyltransferase 6 [ Trichechus manatus latirostris (Florida manatee) ]

Gene ID: 101344258, updated on 8-Mar-2024

Summary

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Gene symbol
GALNT6
Gene description
polypeptide N-acetylgalactosaminyltransferase 6
See related
EnsemblRapid:ENSTMLG00000008253
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichechus manatus latirostris (sub-species: latirostris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Sirenia; Trichechidae; Trichechus
Orthologs
human mouse all
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Genomic context

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See GALNT6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_01 current TriManLat1.0 (GCF_000243295.1) Unplaced Scaffold NW_004444145.1 (2832829..2893970, complement)

NW_004444145.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111822771 Neighboring gene bridging integrator 2 Neighboring gene chymotrypsin like elastase 1 Neighboring gene solute carrier family 4 member 8 Neighboring gene sodium voltage-gated channel alpha subunit 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004444145 Unplaced Scaffold Reference TriManLat1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polypeptide N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 6
Names
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000243295.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TriManLat1.0 Primary Assembly

Genomic

  1. NW_004444145.1 Reference TriManLat1.0 Primary Assembly

    Range
    2832829..2893970 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023742417.1 → XP_023598185.1  polypeptide N-acetylgalactosaminyltransferase 6 isoform X2

    UniProtKB/TrEMBL
    A0A2Y9RT88
    Related
    ENSTMLP00000011465.1, ENSTMLT00000012341.1
    Conserved Domains (2) summary
    cd02510
    Location:180 → 485
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:497 → 570
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_004388343.3 → XP_004388400.1  polypeptide N-acetylgalactosaminyltransferase 6 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9E757
    Related
    ENSTMLP00000011434.1, ENSTMLT00000012312.1
    Conserved Domains (4) summary
    cd02510
    Location:180 → 485
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    COG0463
    Location:176 → 469
    WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    cd00161
    Location:499 → 621
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:497 → 619
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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