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KIRREL3 kirre like nephrin family adhesion molecule 3 [ Trichechus manatus latirostris (Florida manatee) ]

Gene ID: 101342683, updated on 8-Mar-2024

Summary

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Gene symbol
KIRREL3
Gene description
kirre like nephrin family adhesion molecule 3
See related
EnsemblRapid:ENSTMLG00000006511
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichechus manatus latirostris (sub-species: latirostris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Sirenia; Trichechidae; Trichechus
Orthologs
human mouse all
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Genomic context

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See KIRREL3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_01 current TriManLat1.0 (GCF_000243295.1) Unplaced Scaffold NW_004444000.1 (11670662..12364700)

NW_004444000.1Genomic Context describing neighboring genes Neighboring gene ETS proto-oncogene 1, transcription factor Neighboring gene uncharacterized LOC111821091 Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene transfer RNA opal suppressor (anticodon UCA) Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 4 Neighboring gene decapping enzyme, scavenger

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004444000 Unplaced Scaffold Reference TriManLat1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 3
Names
kin of IRRE like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000243295.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TriManLat1.0 Primary Assembly

Genomic

  1. NW_004444000.1 Reference TriManLat1.0 Primary Assembly

    Range
    11670662..12364700
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004379337.1 → XP_004379394.1  kin of IRRE-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9DSD1
    Related
    ENSTMLP00000009071.1, ENSTMLT00000009791.1
    Conserved Domains (7) summary
    cd05759
    Location:165 → 246
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:418 → 515
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00408
    Location:349 → 400
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:426 → 515
    IG_like; Immunoglobulin like
    pfam07679
    Location:335 → 416
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:254 → 331
    Ig_2; Immunoglobulin domain
    cl11960
    Location:52 → 143
    Ig; Immunoglobulin domain

  2. XM_004379338.2 → XP_004379395.1  kin of IRRE-like protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A2Y9DQX9
    Related
    ENSTMLP00000009083.1, ENSTMLT00000009803.1
    Conserved Domains (7) summary
    cd05759
    Location:165 → 246
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:418 → 515
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00408
    Location:349 → 400
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:426 → 515
    IG_like; Immunoglobulin like
    pfam07679
    Location:335 → 416
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:254 → 331
    Ig_2; Immunoglobulin domain
    cl11960
    Location:52 → 143
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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