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OGT O-linked N-acetylglucosamine (GlcNAc) transferase [ Trichechus manatus latirostris (Florida manatee) ]

Gene ID: 101341664, updated on 8-Mar-2024

Summary

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Gene symbol
OGT
Gene description
O-linked N-acetylglucosamine (GlcNAc) transferase
See related
EnsemblRapid:ENSTMLG00000016996
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichechus manatus latirostris (sub-species: latirostris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Sirenia; Trichechidae; Trichechus
Orthologs
human mouse all
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Genomic context

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See OGT in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_01 current TriManLat1.0 (GCF_000243295.1) Unplaced Scaffold NW_004444006.1 (8214025..8270137)

NW_004444006.1Genomic Context describing neighboring genes Neighboring gene TATA-box binding protein associated factor 1 Neighboring gene suppressor of cytokine signaling 6-like Neighboring gene germ cell nuclear acidic peptidase Neighboring gene C-X-C motif chemokine receptor 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004444006 Unplaced Scaffold Reference TriManLat1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein O-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000243295.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TriManLat1.0 Primary Assembly

Genomic

  1. NW_004444006.1 Reference TriManLat1.0 Primary Assembly

    Range
    8214025..8270137
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004380142.1 → XP_004380199.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X2

    UniProtKB/TrEMBL
    A0A2Y9DS68
    Conserved Domains (7) summary
    cd05804
    Location:110 → 270
    StaR_like; StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been ...
    COG0457
    Location:194 → 451
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:317 → 345
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:79 → 112
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:79 → 144
    TPR_11; TPR repeat
    pfam13424
    Location:143 → 213
    TPR_12; Tetratricopeptide repeat
    pfam13844
    Location:546 → 1014
    Glyco_transf_41; Glycosyl transferase family 41

  2. XM_004380141.2 → XP_004380198.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X1

    UniProtKB/TrEMBL
    A0A2Y9DSD6
    Related
    ENSTMLP00000023918.1, ENSTMLT00000025647.1
    Conserved Domains (7) summary
    cd05804
    Location:120 → 280
    StaR_like; StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been ...
    COG0457
    Location:204 → 461
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:327 → 355
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:89 → 122
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:89 → 154
    TPR_11; TPR repeat
    pfam13424
    Location:153 → 223
    TPR_12; Tetratricopeptide repeat
    pfam13844
    Location:556 → 1024
    Glyco_transf_41; Glycosyl transferase family 41

  3. XM_023734681.1 → XP_023590449.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X3

    UniProtKB/TrEMBL
    A0A2Y9REQ4
    Conserved Domains (4) summary
    COG3914
    Location:345 → 731
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:327 → 355
    TPR; TPR repeat [structural motif]
    cl10013
    Location:556 → 863
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
    cl26002
    Location:22 → 465
    TPR_11; TPR repeat
Nucleotide Protein
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