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LOC101292423 cellulose synthase-like protein D3 [ Fragaria vesca (wild strawberry) ]

Gene ID: 101292423, updated on 11-Jan-2024

Summary

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Gene symbol
LOC101292423
Gene description
cellulose synthase-like protein D3
Gene type
protein coding
RefSeq status
MODEL
Organism
Fragaria vesca
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Genomic context

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See LOC101292423 in Genome Data Viewer
Location:
chromosome: LG5
Exon count:
4
Annotation release Status Assembly LG Location
101 current FraVesHawaii_1.0 (GCF_000184155.1) LG5 NC_020495.1 (20582592..20588543, complement)

Linkage Group LG5 - NC_020495.1Genomic Context describing neighboring genes Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 30 Neighboring gene uncharacterized LOC101293397 Neighboring gene uncharacterized LOC101293592 Neighboring gene protein SUPPRESSOR OF GENE SILENCING 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020495.1 Chromosome LG5 Reference FraVesHawaii_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase-like protein D3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fragaria vesca Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FraVesHawaii_1.0 Primary Assembly

Genomic

  1. NC_020495.1 Reference FraVesHawaii_1.0 Primary Assembly

    Range
    20582592..20588543 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004301607.2 → XP_004301655.1  cellulose synthase-like protein D3

    Conserved Domains (3) summary
    PLN02248
    Location:11 → 1114
    PLN02248; cellulose synthase-like protein
    pfam14570
    Location:110 → 158
    zf-RING_4; RING/Ubox like zinc-binding domain
    cl11394
    Location:567 → 867
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases