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SFTPA1 surfactant protein A1 [ Orcinus orca (killer whale) ]

Gene ID: 101289406, updated on 8-Mar-2024

Summary

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Gene symbol
SFTPA1
Gene description
surfactant protein A1
See related
EnsemblRapid:ENSOORG00010003284
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human all
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Genomic context

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See SFTPA1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 14 NC_064572.1 (37025004..37035452, complement)

Chromosome 14 - NC_064572.1Genomic Context describing neighboring genes Neighboring gene surfactant protein D Neighboring gene mannose-binding protein A-like Neighboring gene S-adenosylmethionine synthase Neighboring gene DPY30 domain containing 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064572.1 Chromosome 14 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in multivesicular body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in rough endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pulmonary surfactant-associated protein A1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064572.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    37025004..37035452 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049696963.1 → XP_049552920.1  pulmonary surfactant-associated protein A1 isoform X1

  2. XM_049696964.1 → XP_049552921.1  pulmonary surfactant-associated protein A1 isoform X1

  3. XM_033433980.2 → XP_033289871.1  pulmonary surfactant-associated protein A1 isoform X2

    Related
    ENSOORP00010003591.1, ENSOORT00010004629.1
    Conserved Domains (2) summary
    cd03591
    Location:136 → 248
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:28 → 100
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
Heading Accession and Version

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