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LMAN2L lectin, mannose binding 2 like [ Orcinus orca (killer whale) ]

Gene ID: 101288426, updated on 19-Jun-2024

Summary

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Gene symbol
LMAN2L
Gene description
lectin, mannose binding 2 like
See related
EnsemblRapid:ENSOORG00010010220
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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See LMAN2L in Genome Data Viewer
Location:
chromosome: 13
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 13 NC_064571.1 (9112527..9136897)

Chromosome 13 - NC_064571.1Genomic Context describing neighboring genes Neighboring gene cyclin and CBS domain divalent metal cation transport mediator 3 Neighboring gene cyclin and CBS domain divalent metal cation transport mediator 4 Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene fer-1 like family member 5 Neighboring gene KAT8 regulatory NSL complex subunit 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064571.1 Chromosome 13 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIP36-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064571.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    9112527..9136897
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004277780.4 → XP_004277828.1  VIP36-like protein isoform X3

    Related
    ENSOORP00010012752.1, ENSOORT00010014998.1
    Conserved Domains (1) summary
    cl14058
    Location:50 → 298
    lectin_L-type; legume lectins

  2. XM_033401878.2 → XP_033257769.2  VIP36-like protein isoform X4

  3. XM_033401879.2 → XP_033257770.1  VIP36-like protein isoform X5

    Conserved Domains (1) summary
    cl14058
    Location:50 → 257
    lectin_L-type; legume lectins

  4. XM_033401876.2 → XP_033257767.1  VIP36-like protein isoform X1

    Conserved Domains (1) summary
    cl14058
    Location:50 → 311
    lectin_L-type; legume lectins

  5. XM_004277779.4 → XP_004277827.1  VIP36-like protein isoform X2

    Related
    ENSOORP00010012751.1, ENSOORT00010014997.1
    Conserved Domains (1) summary
    cl14058
    Location:50 → 309
    lectin_L-type; legume lectins

  6. XM_033401880.2 → XP_033257771.1  VIP36-like protein isoform X7

    Conserved Domains (1) summary
    cl14058
    Location:1 → 171
    lectin_L-type; legume lectins

  7. XM_033401883.2 → XP_033257774.1  VIP36-like protein isoform X6

    Conserved Domains (1) summary
    cl14058
    Location:18 → 224
    lectin_L-type; legume lectins

  8. XM_033401882.1 → XP_033257773.1  VIP36-like protein isoform X7

    Conserved Domains (1) summary
    cl14058
    Location:1 → 171
    lectin_L-type; legume lectins
Nucleotide Protein
Heading Accession and Version

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