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POLR2I RNA polymerase II subunit I [ Orcinus orca (killer whale) ]

Gene ID: 101284793, updated on 8-Mar-2024

Summary

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Gene symbol
POLR2I
Gene description
RNA polymerase II subunit I
See related
EnsemblRapid:ENSOORG00010011010
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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See POLR2I in Genome Data Viewer
Location:
chromosome: 20
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 20 NC_064578.1 (43818434..43819986, complement)

Chromosome 20 - NC_064578.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain 62 Neighboring gene uncharacterized LOC117198255 Neighboring gene ovo like zinc finger 3 Neighboring gene tubulin folding cofactor B Neighboring gene calpain small subunit 1 Neighboring gene cytochrome c oxidase subunit 7A1, mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064578.1 Chromosome 20 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription-coupled nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase II subunit RPB9
Names
polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064578.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    43818434..43819986 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004284193.3 → XP_004284241.1  DNA-directed RNA polymerase II subunit RPB9

    See identical proteins and their annotated locations for XP_004284241.1

    Related
    ENSOORP00010013849.1, ENSOORT00010016194.1
    Conserved Domains (2) summary
    COG1594
    Location:14 → 125
    RPB9; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
    cd10508
    Location:74 → 124
    Zn-ribbon_RPB9; C-terminal zinc ribbon domain of RPB9 subunit of RNA polymerase II
Nucleotide Protein
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