U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PLD1 phospholipase D1 [ Orcinus orca (killer whale) ]

Gene ID: 101284082, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
PLD1
Gene description
phospholipase D1
See related
EnsemblRapid:ENSOORG00010001227
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See PLD1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
31
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 5 NC_064563.1 (54427299..54629132, complement)

Chromosome 5 - NC_064563.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene solute carrier family 2 member 2 Neighboring gene TRAF2 and NCK interacting kinase Neighboring gene uncharacterized LOC125964393 Neighboring gene transmembrane protein 212 Neighboring gene collagen alpha-1(I) chain-like Neighboring gene fibronectin type III domain containing 3B

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_064563.1 Chromosome 5 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipase D activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell motility IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidic acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of microvillus assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
phospholipase D1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064563.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    54427299..54629132 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033429529.2 → XP_033285420.1  phospholipase D1 isoform X4

    Conserved Domains (1) summary
    PLN02866
    Location:159 → 1098
    PLN02866; phospholipase D

  2. XM_033429527.2 → XP_033285418.1  phospholipase D1 isoform X2

    Conserved Domains (1) summary
    PLN02866
    Location:159 → 1099
    PLN02866; phospholipase D

  3. XM_033429525.2 → XP_033285416.1  phospholipase D1 isoform X1

    Conserved Domains (1) summary
    PLN02866
    Location:159 → 1136
    PLN02866; phospholipase D

  4. XM_033429528.2 → XP_033285419.1  phospholipase D1 isoform X3

    Conserved Domains (1) summary
    PLN02866
    Location:159 → 1098
    PLN02866; phospholipase D

  5. XM_049709766.1 → XP_049565723.1  phospholipase D1 isoform X6

  6. XM_033429531.2 → XP_033285422.1  phospholipase D1 isoform X6

    Conserved Domains (1) summary
    PLN02866
    Location:82 → 1059
    PLN02866; phospholipase D

  7. XM_004270546.4 → XP_004270594.1  phospholipase D1 isoform X6

    Related
    ENSOORP00010001043.1, ENSOORT00010001591.1
    Conserved Domains (1) summary
    PLN02866
    Location:82 → 1059
    PLN02866; phospholipase D

  8. XM_033429530.2 → XP_033285421.1  phospholipase D1 isoform X5

    Conserved Domains (1) summary
    PLN02866
    Location:159 → 1076
    PLN02866; phospholipase D

  9. XM_033429532.2 → XP_033285423.1  phospholipase D1 isoform X7

    Conserved Domains (1) summary
    PLN02866
    Location:159 → 1034
    PLN02866; phospholipase D
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.