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DYSF dysferlin [ Orcinus orca (killer whale) ]

Gene ID: 101283763, updated on 8-Mar-2024

Summary

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Gene symbol
DYSF
Gene description
dysferlin
See related
EnsemblRapid:ENSOORG00010009630
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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See DYSF in Genome Data Viewer
Location:
chromosome: 13
Exon count:
59
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 13 NC_064571.1 (31081959..31305719, complement)

Chromosome 13 - NC_064571.1Genomic Context describing neighboring genes Neighboring gene dnaJ homolog subfamily A member 1-like Neighboring gene exocyst complex component 6B Neighboring gene cytochrome P450 26B1 Neighboring gene ATP synthase F(0) complex subunit C3, mitochondrial-like Neighboring gene zinc finger protein 638

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064571.1 Chromosome 13 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in T-tubule organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macrophage activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monocyte activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plasma membrane repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in T-tubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dysferlin
Names
dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064571.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    31081959..31305719 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033400464.2 → XP_033256355.2  dysferlin isoform X2

  2. XM_004277066.3 → XP_004277114.2  dysferlin isoform X21

  3. XM_004277062.3 → XP_004277110.2  dysferlin isoform X17

  4. XM_004277064.3 → XP_004277112.2  dysferlin isoform X19

  5. XM_004277058.3 → XP_004277106.2  dysferlin isoform X13

  6. XM_033400472.2 → XP_033256363.2  dysferlin isoform X9

  7. XM_004277060.3 → XP_004277108.2  dysferlin isoform X15

  8. XM_004277053.3 → XP_004277101.2  dysferlin isoform X7

    Related
    ENSOORP00010012025.1, ENSOORT00010014192.1

  9. XM_004277055.3 → XP_004277103.2  dysferlin isoform X11

  10. XM_033400463.2 → XP_033256354.2  dysferlin isoform X1

  11. XM_004277057.3 → XP_004277105.2  dysferlin isoform X12

    Related
    ENSOORP00010012024.1, ENSOORT00010014191.1

  12. XM_033400471.2 → XP_033256362.2  dysferlin isoform X8

  13. XM_004277052.3 → XP_004277100.2  dysferlin isoform X6

    Related
    ENSOORP00010012014.1, ENSOORT00010014181.1

  14. XM_033400467.2 → XP_033256358.2  dysferlin isoform X4

  15. XM_004277054.3 → XP_004277102.2  dysferlin isoform X10

    Related
    ENSOORP00010012021.1, ENSOORT00010014188.1

  16. XM_033400466.2 → XP_033256357.2  dysferlin isoform X3

  17. XM_033400469.2 → XP_033256360.2  dysferlin isoform X5

  18. XM_004277065.3 → XP_004277113.2  dysferlin isoform X20

  19. XM_004277061.3 → XP_004277109.2  dysferlin isoform X16

  20. XM_004277063.3 → XP_004277111.2  dysferlin isoform X18

  21. XM_004277059.3 → XP_004277107.2  dysferlin isoform X14

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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