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FDFT1 farnesyl-diphosphate farnesyltransferase 1 [ Orcinus orca (killer whale) ]

Gene ID: 101283685, updated on 18-Sep-2024

Summary

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Gene symbol
FDFT1
Gene description
farnesyl-diphosphate farnesyltransferase 1
See related
EnsemblRapid:ENSOORG00010005771
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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See FDFT1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 6 NC_064564.1 (12374966..12418853, complement)

Chromosome 6 - NC_064564.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene cathepsin B Neighboring gene uncharacterized LOC117196160 Neighboring gene nei like DNA glycosylase 2 Neighboring gene GATA binding protein 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064564.1 Chromosome 6 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables squalene synthase [NAD(P)H] activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in farnesyl diphosphate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
squalene synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064564.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    12374966..12418853 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049711245.1 → XP_049567202.1  squalene synthase isoform X3

    Related
    ENSOORP00010006796.1, ENSOORT00010008317.1

  2. XM_004278693.4 → XP_004278741.1  squalene synthase isoform X2

    Related
    ENSOORP00010006795.1, ENSOORT00010008316.1
    Conserved Domains (1) summary
    cl00210
    Location:38 → 370
    Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1

  3. XM_033403622.2 → XP_033259513.1  squalene synthase isoform X4

    Conserved Domains (1) summary
    cl00210
    Location:1 → 306
    Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1

  4. XM_012536319.3 → XP_012391773.1  squalene synthase isoform X1

    Related
    ENSOORP00010006788.1, ENSOORT00010008309.1
    Conserved Domains (1) summary
    cl00210
    Location:92 → 424
    Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1
Nucleotide Protein
Heading Accession and Version

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