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B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) [ Orcinus orca (killer whale) ]

Gene ID: 101281290, updated on 8-Mar-2024

Summary

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Gene symbol
B3GALNT1
Gene description
beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)
See related
EnsemblRapid:ENSOORG00010007086
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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See B3GALNT1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 5 NC_064563.1 (45773438..45805675, complement)

Chromosome 5 - NC_064563.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1L Neighboring gene uncharacterized LOC125964543 Neighboring gene cytochrome b-like Neighboring gene uncharacterized LOC105748644 Neighboring gene NMD3 ribosome export adaptor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064563.1 Chromosome 5 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064563.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    45773438..45805675 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033409489.2 → XP_033265380.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    Conserved Domains (1) summary
    pfam01762
    Location:92 → 285
    Galactosyl_T; Galactosyltransferase

  2. XM_033409498.2 → XP_033265389.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    Conserved Domains (1) summary
    pfam01762
    Location:92 → 285
    Galactosyl_T; Galactosyltransferase

  3. XM_033409510.2 → XP_033265401.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    Conserved Domains (1) summary
    pfam01762
    Location:92 → 285
    Galactosyl_T; Galactosyltransferase

  4. XM_033409505.2 → XP_033265396.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    Conserved Domains (1) summary
    pfam01762
    Location:92 → 285
    Galactosyl_T; Galactosyltransferase

  5. XM_033409488.2 → XP_033265379.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    Related
    ENSOORP00010008577.1, ENSOORT00010010307.1
    Conserved Domains (1) summary
    pfam01762
    Location:92 → 285
    Galactosyl_T; Galactosyltransferase

  6. XM_049710523.1 → XP_049566480.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

  7. XM_049710522.1 → XP_049566479.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    Related
    ENSOORP00010008579.1, ENSOORT00010010309.1

  8. XM_049710524.1 → XP_049566481.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

  9. XM_004281859.4 → XP_004281907.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    Conserved Domains (1) summary
    pfam01762
    Location:92 → 285
    Galactosyl_T; Galactosyltransferase

  10. XM_033409493.2 → XP_033265384.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    Conserved Domains (1) summary
    pfam01762
    Location:92 → 285
    Galactosyl_T; Galactosyltransferase

  11. XM_033409501.2 → XP_033265392.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    Conserved Domains (1) summary
    pfam01762
    Location:92 → 285
    Galactosyl_T; Galactosyltransferase

  12. XM_033409499.2 → XP_033265390.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    Conserved Domains (1) summary
    pfam01762
    Location:92 → 285
    Galactosyl_T; Galactosyltransferase

  13. XM_033409486.2 → XP_033265377.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    Conserved Domains (1) summary
    pfam01762
    Location:92 → 285
    Galactosyl_T; Galactosyltransferase

  14. XM_033409503.2 → XP_033265394.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    Conserved Domains (1) summary
    pfam01762
    Location:92 → 285
    Galactosyl_T; Galactosyltransferase

  15. XM_033409490.2 → XP_033265381.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    Conserved Domains (1) summary
    pfam01762
    Location:92 → 285
    Galactosyl_T; Galactosyltransferase

  16. XM_033409506.2 → XP_033265397.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    Conserved Domains (1) summary
    pfam01762
    Location:92 → 285
    Galactosyl_T; Galactosyltransferase

  17. XM_033409491.2 → XP_033265382.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    Conserved Domains (1) summary
    pfam01762
    Location:92 → 285
    Galactosyl_T; Galactosyltransferase

  18. XM_033409500.2 → XP_033265391.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    Conserved Domains (1) summary
    pfam01762
    Location:92 → 285
    Galactosyl_T; Galactosyltransferase

  19. XM_033409508.2 → XP_033265399.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    Conserved Domains (1) summary
    pfam01762
    Location:92 → 285
    Galactosyl_T; Galactosyltransferase

  20. XM_033409494.2 → XP_033265385.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    Conserved Domains (1) summary
    pfam01762
    Location:92 → 285
    Galactosyl_T; Galactosyltransferase

  21. XM_033409502.2 → XP_033265393.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    Conserved Domains (1) summary
    pfam01762
    Location:92 → 285
    Galactosyl_T; Galactosyltransferase

  22. XM_033409487.2 → XP_033265378.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    Conserved Domains (1) summary
    pfam01762
    Location:92 → 285
    Galactosyl_T; Galactosyltransferase

  23. XM_033409492.2 → XP_033265383.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    Conserved Domains (1) summary
    pfam01762
    Location:92 → 285
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
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