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PTGDS prostaglandin D2 synthase [ Orcinus orca (killer whale) ]

Gene ID: 101280808, updated on 8-Mar-2024

Summary

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Gene symbol
PTGDS
Gene description
prostaglandin D2 synthase
See related
EnsemblRapid:ENSOORG00010018496
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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See PTGDS in Genome Data Viewer
Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 6 NC_064564.1 (120027581..120032341)

Chromosome 6 - NC_064564.1Genomic Context describing neighboring genes Neighboring gene F-box and WD repeat domain containing 5 Neighboring gene complement C8 gamma chain Neighboring gene lipocalin like 1 Neighboring gene PAXX non-homologous end joining factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064564.1 Chromosome 6 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables small molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prostaglandin-H2 D-isomerase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064564.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    120027581..120032341
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049711231.1 → XP_049567188.1  prostaglandin-H2 D-isomerase

    Related
    ENSOORP00010024245.1, ENSOORT00010027612.1

  2. XM_012538750.3 → XP_012394204.1  prostaglandin-H2 D-isomerase

    See identical proteins and their annotated locations for XP_012394204.1

    Conserved Domains (1) summary
    pfam00061
    Location:40 → 184
    Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family

RNA

  1. XR_007478003.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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