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GAPDH glyceraldehyde-3-phosphate dehydrogenase [ Orcinus orca (killer whale) ]

Gene ID: 101280250, updated on 8-Mar-2024

Summary

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Gene symbol
GAPDH
Gene description
glyceraldehyde-3-phosphate dehydrogenase
See related
EnsemblRapid:ENSOORG00010017963
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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See GAPDH in Genome Data Viewer
Location:
chromosome: 11
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 11 NC_064569.1 (6585783..6590219)

Chromosome 11 - NC_064569.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L51 Neighboring gene non-SMC condensin I complex subunit D2 Neighboring gene small nucleolar RNA U85 Neighboring gene uncharacterized LOC125960472 Neighboring gene intermediate filament family orphan 1 Neighboring gene NOP2 nucleolar protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064569.1 Chromosome 11 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. PCB-associated changes in mRNA expression in killer whales (Orcinus orca) from the NE Pacific Ocean. Buckman AH, et al. Environ Sci Technol, 2011 Dec 1. PMID 21985468
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables NADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glyceraldehyde-3-phosphate dehydrogenase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064569.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    6585783..6590219
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004279036.3 → XP_004279084.2  glyceraldehyde-3-phosphate dehydrogenase

    Related
    ENSOORP00010023616.1, ENSOORT00010026858.1
Nucleotide Protein
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Gene LinkOut

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