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HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 [ Orcinus orca (killer whale) ]

Gene ID: 101277987, updated on 8-Mar-2024

Summary

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Gene symbol
HS3ST1
Gene description
heparan sulfate-glucosamine 3-sulfotransferase 1
See related
EnsemblRapid:ENSOORG00010023123
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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See HS3ST1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 4 NC_064562.1 (115800888..115865638)

Chromosome 4 - NC_064562.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U83B Neighboring gene uncharacterized LOC117201225 Neighboring gene uncharacterized LOC117201223 Neighboring gene heterogeneous nuclear ribonucleoprotein A1-like Neighboring gene cytokine dependent hematopoietic cell linker

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064562.1 Chromosome 4 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064562.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    115800888..115865638
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004269637.4 → XP_004269685.1  heparan sulfate glucosamine 3-O-sulfotransferase 1

    See identical proteins and their annotated locations for XP_004269685.1

    Conserved Domains (1) summary
    pfam00685
    Location:58 → 295
    Sulfotransfer_1; Sulfotransferase domain

  2. XM_049709445.1 → XP_049565402.1  heparan sulfate glucosamine 3-O-sulfotransferase 1

    Related
    ENSOORP00010030734.1, ENSOORT00010034635.1

  3. XM_049709444.1 → XP_049565401.1  heparan sulfate glucosamine 3-O-sulfotransferase 1

RNA

  1. XR_007477196.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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