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ICAM5 intercellular adhesion molecule 5 [ Orcinus orca (killer whale) ]

Gene ID: 101277454, updated on 8-Mar-2024

Summary

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Gene symbol
ICAM5
Gene description
intercellular adhesion molecule 5
See related
EnsemblRapid:ENSOORG00010022554
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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See ICAM5 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 3 NC_064561.1 (6943702..6951065)

Chromosome 3 - NC_064561.1Genomic Context describing neighboring genes Neighboring gene intercellular adhesion molecule 1 Neighboring gene intercellular adhesion molecule 4 (Landsteiner-Wiener blood group) Neighboring gene zinc finger GATA like protein 1 Neighboring gene ferredoxin 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064561.1 Chromosome 3 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
intercellular adhesion molecule 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064561.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    6943702..6951065
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049707538.1 → XP_049563495.1  intercellular adhesion molecule 5 isoform X2

  2. XM_004277352.3 → XP_004277400.1  intercellular adhesion molecule 5 isoform X1

    Related
    ENSOORP00010029914.1, ENSOORT00010033768.1
    Conserved Domains (6) summary
    cd05755
    Location:120 → 219
    Ig2_ICAM-1_like; Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins
    smart00408
    Location:760 → 820
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:758 → 830
    IG_like; Immunoglobulin like
    pfam03921
    Location:31 → 103
    ICAM_N; Intercellular adhesion molecule (ICAM), N-terminal domain
    pfam13895
    Location:325 → 404
    Ig_2; Immunoglobulin domain
    cl11960
    Location:424 → 487
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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