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HS3ST5 heparan sulfate-glucosamine 3-sulfotransferase 5 [ Orcinus orca (killer whale) ]

Gene ID: 101277155, updated on 8-Mar-2024

Summary

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Gene symbol
HS3ST5
Gene description
heparan sulfate-glucosamine 3-sulfotransferase 5
See related
EnsemblRapid:ENSOORG00010004328
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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See HS3ST5 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 12 NC_064570.1 (44885218..45172307)

Chromosome 12 - NC_064570.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125960700 Neighboring gene uncharacterized LOC125960703 Neighboring gene sentrin-specific protease 2-like Neighboring gene uncharacterized LOC125960704

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064570.1 Chromosome 12 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064570.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    44885218..45172307
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049695537.1 → XP_049551494.1  heparan sulfate glucosamine 3-O-sulfotransferase 5

    Related
    ENSOORP00010005000.1, ENSOORT00010006225.1

  2. XM_033418623.2 → XP_033274514.1  heparan sulfate glucosamine 3-O-sulfotransferase 5

    Conserved Domains (1) summary
    pfam00685
    Location:89 → 329
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein
Heading Accession and Version

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