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PKD1L2 polycystin-1-like protein 2 [ Orcinus orca (killer whale) ]

Gene ID: 101276792, updated on 8-Mar-2024

Summary

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Gene symbol
PKD1L2
Gene description
polycystin-1-like protein 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human all
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Genomic context

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See PKD1L2 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
40
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 20 NC_064578.1 (7196503..7280056)

Chromosome 20 - NC_064578.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117196718 Neighboring gene uncharacterized LOC125962763 Neighboring gene gigaxonin Neighboring gene beta-carotene oxygenase 1 Neighboring gene uncharacterized LOC117196722 Neighboring gene chromosome 20 C16orf46 homolog Neighboring gene glycine cleavage system protein H

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064578.1 Chromosome 20 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in detection of mechanical stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 2
Names
polycystin 1 like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064578.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    7196503..7280056
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049703631.1 → XP_049559588.1  LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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