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CD109 CD109 molecule [ Orcinus orca (killer whale) ]

Gene ID: 101276089, updated on 8-Mar-2024

Summary

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Gene symbol
CD109
Gene description
CD109 molecule
See related
EnsemblRapid:ENSOORG00010007740
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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See CD109 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
35
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 12 NC_064570.1 (78578910..78716920, complement)

Chromosome 12 - NC_064570.1Genomic Context describing neighboring genes Neighboring gene low molecular weight phosphotyrosine protein phosphatase-like Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene U6 spliceosomal RNA Neighboring gene solute carrier family 17 member 5 Neighboring gene transfer RNA alanine (anticodon UGC)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064570.1 Chromosome 12 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CD109 antigen

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064570.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    78578910..78716920 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033428617.2 → XP_033284508.2  CD109 antigen isoform X2

  2. XM_049695428.1 → XP_049551385.1  CD109 antigen isoform X3

  3. XM_033428620.2 → XP_033284511.2  CD109 antigen isoform X3

  4. XM_012533104.3 → XP_012388558.2  CD109 antigen isoform X1

    Related
    ENSOORP00010009551.1, ENSOORT00010011359.1
Nucleotide Protein
Heading Accession and Version

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