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LYPD3 LY6/PLAUR domain containing 3 [ Orcinus orca (killer whale) ]

Gene ID: 101275928, updated on 8-Mar-2024

Summary

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Gene symbol
LYPD3
Gene description
LY6/PLAUR domain containing 3
See related
EnsemblRapid:ENSOORG00010012069
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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See LYPD3 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 20 NC_064578.1 (48105438..48109525, complement)

Chromosome 20 - NC_064578.1Genomic Context describing neighboring genes Neighboring gene CD177 molecule Neighboring gene uncharacterized LOC117201803 Neighboring gene testis expressed 101 Neighboring gene pleckstrin homology like domain family B member 3 Neighboring gene small integral membrane protein 30-like Neighboring gene ETHE1 persulfide dioxygenase Neighboring gene X-ray repair cross complementing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064578.1 Chromosome 20 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ly6/PLAUR domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064578.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    48105438..48109525 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004271364.4 → XP_004271412.1  ly6/PLAUR domain-containing protein 3

    Related
    ENSOORP00010015370.1, ENSOORT00010017812.1
    Conserved Domains (2) summary
    cd00117
    Location:34 → 119
    LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...
    pfam00021
    Location:143 → 225
    UPAR_LY6; u-PAR/Ly-6 domain
Nucleotide Protein
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