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LOC101275319 cofilin-2 [ Orcinus orca (killer whale) ]

Gene ID: 101275319, updated on 2-Nov-2023

Summary

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Gene symbol
LOC101275319
Gene description
cofilin-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
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Genomic context

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See LOC101275319 in Genome Data Viewer
Location:
chromosome: X
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) X NC_064580.1 (63490860..63491600, complement)

Chromosome X - NC_064580.1Genomic Context describing neighboring genes Neighboring gene histone deacetylase 8 Neighboring gene U6 spliceosomal RNA Neighboring gene 60S ribosomal protein L31-like Neighboring gene phosphorylase kinase regulatory subunit alpha 1 Neighboring gene family with sequence similarity 236 member C Neighboring gene DMRT like family C1B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064580.1 Chromosome X Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament fragmentation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in actin filament severing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell motility IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cortical patch IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cofilin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064580.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    63490860..63491600 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049705156.1 → XP_049561113.1  cofilin-2

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases