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COG5 component of oligomeric golgi complex 5 [ Orcinus orca (killer whale) ]

Gene ID: 101274963, updated on 8-Mar-2024

Summary

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Gene symbol
COG5
Gene description
component of oligomeric golgi complex 5
See related
EnsemblRapid:ENSOORG00010013955
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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See COG5 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 9 NC_064567.1 (89445987..89728644, complement)

Chromosome 9 - NC_064567.1Genomic Context describing neighboring genes Neighboring gene protein kinase cAMP-dependent type II regulatory subunit beta Neighboring gene uncharacterized LOC125965423 Neighboring gene HMG-box transcription factor 1 Neighboring gene syntaxin-11-like Neighboring gene G protein-coupled receptor 22 Neighboring gene small nucleolar RNA U109 Neighboring gene dihydrouridine synthase 4 like Neighboring gene B cell receptor associated protein 29

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064567.1 Chromosome 9 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Golgi transport complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
conserved oligomeric Golgi complex subunit 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064567.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    89445987..89728644 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033438877.2 → XP_033294768.1  conserved oligomeric Golgi complex subunit 5 isoform X2

    Conserved Domains (2) summary
    pfam10392
    Location:35 → 158
    COG5; Golgi transport complex subunit 5
    TIGR02168
    Location:54 → 283
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. XM_012534817.3 → XP_012390271.2  conserved oligomeric Golgi complex subunit 5 isoform X1

    Related
    ENSOORP00010018052.1, ENSOORT00010020762.1
    Conserved Domains (1) summary
    pfam10392
    Location:35 → 158
    COG5; Golgi transport complex subunit 5

  3. XM_033438883.2 → XP_033294774.1  conserved oligomeric Golgi complex subunit 5 isoform X3

    Conserved Domains (1) summary
    cl22951
    Location:1 → 57
    Vps51; Vps51/Vps67
Nucleotide Protein
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