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AMT aminomethyltransferase [ Orcinus orca (killer whale) ]

Gene ID: 101274646, updated on 8-Mar-2024

Summary

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Gene symbol
AMT
Gene description
aminomethyltransferase
See related
EnsemblRapid:ENSOORG00010017446
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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See AMT in Genome Data Viewer
Location:
chromosome: 10
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 10 NC_064568.1 (38697675..38703077)

Chromosome 10 - NC_064568.1Genomic Context describing neighboring genes Neighboring gene dystroglycan 1 Neighboring gene nicolin 1, tubulin polyglutamylase complex subunit Neighboring gene T cell leukemia translocation altered Neighboring gene ras homolog family member A Neighboring gene NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064568.1 Chromosome 10 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables aminomethyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aminomethyltransferase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064568.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    38697675..38703077
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004283944.4 → XP_004283992.1  aminomethyltransferase, mitochondrial

    Related
    ENSOORP00010022969.1, ENSOORT00010026106.1
    Conserved Domains (3) summary
    PLN02319
    Location:85 → 469
    PLN02319; aminomethyltransferase
    pfam01571
    Location:108 → 360
    GCV_T; Aminomethyltransferase folate-binding domain
    pfam08669
    Location:370 → 461
    GCV_T_C; Glycine cleavage T-protein C-terminal barrel domain
Nucleotide Protein
Heading Accession and Version

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