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ASPH aspartate beta-hydroxylase [ Orcinus orca (killer whale) ]

Gene ID: 101274120, updated on 8-Mar-2024

Summary

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Gene symbol
ASPH
Gene description
aspartate beta-hydroxylase
See related
EnsemblRapid:ENSOORG00010005997
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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See ASPH in Genome Data Viewer
Location:
chromosome: 17
Exon count:
36
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 17 NC_064575.1 (8104802..8491257, complement)

Chromosome 17 - NC_064575.1Genomic Context describing neighboring genes Neighboring gene PC4 and SFRS1-interacting protein-like Neighboring gene S100P-binding protein Neighboring gene clavesin 1 Neighboring gene uncharacterized LOC125961863 Neighboring gene uncharacterized LOC125961864 Neighboring gene uncharacterized LOC125961865

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064575.1 Chromosome 17 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064575.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    8104802..8491257 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049700865.1 → XP_049556822.1  aspartyl/asparaginyl beta-hydroxylase isoform X4

  2. XM_049700867.1 → XP_049556824.1  aspartyl/asparaginyl beta-hydroxylase isoform X7

  3. XM_033437604.2 → XP_033293495.2  aspartyl/asparaginyl beta-hydroxylase isoform X8

  4. XM_033437599.2 → XP_033293490.2  aspartyl/asparaginyl beta-hydroxylase isoform X1

  5. XM_033437601.2 → XP_033293492.2  aspartyl/asparaginyl beta-hydroxylase isoform X3

  6. XM_033437600.2 → XP_033293491.2  aspartyl/asparaginyl beta-hydroxylase isoform X2

  7. XM_033437603.2 → XP_033293494.2  aspartyl/asparaginyl beta-hydroxylase isoform X5

  8. XM_049700866.1 → XP_049556823.1  aspartyl/asparaginyl beta-hydroxylase isoform X6

  9. XM_049700868.1 → XP_049556825.1  aspartyl/asparaginyl beta-hydroxylase isoform X9

  10. XM_049700869.1 → XP_049556826.1  aspartyl/asparaginyl beta-hydroxylase isoform X10

  11. XM_049700870.1 → XP_049556827.1  aspartyl/asparaginyl beta-hydroxylase isoform X11

  12. XM_049700871.1 → XP_049556828.1  aspartyl/asparaginyl beta-hydroxylase isoform X12

    Related
    ENSOORP00010007168.1, ENSOORT00010008695.1

  13. XM_049700872.1 → XP_049556829.1  aspartyl/asparaginyl beta-hydroxylase isoform X13

    Related
    ENSOORP00010007170.1, ENSOORT00010008697.1

  14. XM_004274980.3 → XP_004275028.1  aspartyl/asparaginyl beta-hydroxylase isoform X14

    Related
    ENSOORP00010007172.1, ENSOORT00010008699.1
    Conserved Domains (1) summary
    pfam05279
    Location:47 → 150
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

RNA

  1. XR_007472942.1 RNA Sequence

  2. XR_007472943.1 RNA Sequence

  3. XR_007472941.1 RNA Sequence

  4. XR_007472939.1 RNA Sequence

  5. XR_007472940.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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