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PSAP prosaposin [ Orcinus orca (killer whale) ]

Gene ID: 101273019, updated on 8-Mar-2024

Summary

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Gene symbol
PSAP
Gene description
prosaposin
See related
EnsemblRapid:ENSOORG00010005524
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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See PSAP in Genome Data Viewer
Location:
chromosome: 14
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 14 NC_064572.1 (30045097..30079285, complement)

Chromosome 14 - NC_064572.1Genomic Context describing neighboring genes Neighboring gene cadherin-23-like Neighboring gene chromosome 14 C10orf105 homolog Neighboring gene cadherin-23 Neighboring gene V-set immunoregulatory receptor Neighboring gene uncharacterized LOC117202561 Neighboring gene carbohydrate sulfotransferase 3 Neighboring gene SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064572.1 Chromosome 14 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in sphingolipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prosaposin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064572.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    30045097..30079285 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033434164.2 → XP_033290055.1  prosaposin isoform X2

    Conserved Domains (3) summary
    smart00162
    Location:21 → 54
    SAPA; Saposin/surfactant protein-B A-type DOMAIN
    smart00741
    Location:312 → 387
    SapB; Saposin (B) Domains
    pfam02199
    Location:491 → 523
    SapA; Saposin A-type domain

  2. XM_004273153.4 → XP_004273201.1  prosaposin isoform X1

    Related
    ENSOORP00010006454.1, ENSOORT00010007951.1
    Conserved Domains (4) summary
    smart00162
    Location:491 → 524
    SAPA; Saposin/surfactant protein-B A-type DOMAIN
    smart00741
    Location:313 → 388
    SapB; Saposin (B) Domains
    pfam03489
    Location:357 → 388
    SapB_2; Saposin-like type B, region 2
    pfam05184
    Location:315 → 349
    SapB_1; Saposin-like type B, region 1
Nucleotide Protein
Heading Accession and Version

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