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CSPG4 chondroitin sulfate proteoglycan 4 [ Orcinus orca (killer whale) ]

Gene ID: 101272026, updated on 8-Mar-2024

Summary

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Gene symbol
CSPG4
Gene description
chondroitin sulfate proteoglycan 4
See related
EnsemblRapid:ENSOORG00010019351
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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See CSPG4 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 2 NC_064560.1 (84303550..84338865)

Chromosome 2 - NC_064560.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat and Ig domain containing 1 Neighboring gene ciliary microtubule associated protein 1C Neighboring gene sorting nexin 33 Neighboring gene IMP U3 small nucleolar ribonucleoprotein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064560.1 Chromosome 2 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
chondroitin sulfate proteoglycan 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064560.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    84303550..84338865
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004276336.4 → XP_004276384.1  chondroitin sulfate proteoglycan 4 isoform X1

    Related
    ENSOORP00010025552.1, ENSOORT00010028990.1
    Conserved Domains (2) summary
    cd00110
    Location:203 → 358
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam16184
    Location:1415 → 1558
    Cadherin_3; Cadherin-like

  2. XM_049705387.1 → XP_049561344.1  chondroitin sulfate proteoglycan 4 isoform X3

  3. XM_033440124.2 → XP_033296015.1  chondroitin sulfate proteoglycan 4 isoform X2

    Conserved Domains (3) summary
    cd00110
    Location:160 → 315
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam16184
    Location:1408 → 1515
    Cadherin_3; Cadherin-like
    cl22861
    Location:27 → 138
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein
Heading Accession and Version

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