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HS6ST2 heparan sulfate 6-O-sulfotransferase 2 [ Orcinus orca (killer whale) ]

Gene ID: 101271824, updated on 8-Mar-2024

Summary

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Gene symbol
HS6ST2
Gene description
heparan sulfate 6-O-sulfotransferase 2
See related
EnsemblRapid:ENSOORG00010012995
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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See HS6ST2 in Genome Data Viewer
Location:
chromosome: X
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) X NC_064580.1 (114702393..114991888, complement)

Chromosome X - NC_064580.1Genomic Context describing neighboring genes Neighboring gene RAP2C, member of RAS oncogene family Neighboring gene U6 spliceosomal RNA Neighboring gene muscleblind like splicing regulator 3 Neighboring gene cytochrome c oxidase subunit 7B, mitochondrial-like Neighboring gene ubiquitin specific peptidase 26

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064580.1 Chromosome X Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan-sulfate 6-O-sulfotransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064580.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    114702393..114991888 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012538948.3 → XP_012394402.1  heparan-sulfate 6-O-sulfotransferase 2 isoform X3

    Related
    ENSOORP00010016627.1, ENSOORT00010019211.1
    Conserved Domains (2) summary
    pfam03567
    Location:225 → 490
    Sulfotransfer_2; Sulfotransferase family
    pfam15951
    Location:498 → 588
    MITF_TFEB_C_3_N; MITF/TFEB/TFEC/TFE3 N-terminus

  2. XM_033416106.2 → XP_033271997.1  heparan-sulfate 6-O-sulfotransferase 2 isoform X1

    Related
    ENSOORP00010016625.1, ENSOORT00010019209.1
    Conserved Domains (1) summary
    pfam03567
    Location:225 → 530
    Sulfotransfer_2; Sulfotransferase family

  3. XM_049704962.1 → XP_049560919.1  heparan-sulfate 6-O-sulfotransferase 2 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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